This is a graduate course I taught in the College of Life Sciences at Jeju National University. The main goal of this course is to present some basic ideas of the relatively new field called “Systems Biology”, and how it involves the use of computer modeling and visualization techniques in order to describe complex metabolic, regulatory and transcription networks functioning inside the living cells. One reason for the development of these techniques was to handle and analyze the large amounts of data resulting from high-throughput genomic and proteomic experiments, so an overview of different online biological databases currently available is also presented.
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Two data visualizations I did in 2010 using the output of folding simulations of protein molecules. These renderings were created by combining thousands of protein models generated by the computer across several simulations for the protein
During the time I did research in the protein folding problem, also started to develop some software to generate 3D representations of biological molecules, mainly proteins. The original code used
As a postdoctoral researcher at the University of Chicago from 2002 to 2005, I studied the